you can make copies of them.first go to the battle tower.put any pokemon holding a rare candy in the pc.save then take it out and put it in your party.go to the link battles and say lv. 100.just pick any two pokemon and when she sais to save save.when it sais saving dont turn off the power turn it off.ir will say the data has corrupted.continue and check your party. you will have it in the pc too.
WARNING!!!!!!!!! some of your pokemon might disappear like my articuno,zapdos and mewtwo but i had a copy of them anyway. GOOD LUCK

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