* The player wakes up one day in the Pokémon world, a human turned into a
Pokémon.
* This world is suffering an imbalance in nature, with natural disasters occurring
everywhere.
* The player and their partner form a rescue team after successfully rescuing
Caterpie.
* Soon after, they rescue two Magnemite, one which joins the team.
* Team Meanies steal the requests for help from the player's mailbox. The team rescues
a Metapod who is stuck at Sinister Woods.
* A Jumpluff is stuck at Silent Chasm. Shiftry is asked to go. The team goes down to
rescue Shiftry.
* After Zapdos kidnaps Shiftry, the player must fight it at the top of Mt. Thunder.
* The player consults Xatu for an explanation of their presence in this world as a
Pokémon at Great Canyon.
* The player learns of the legend of Ninetales: one day, a human angered a Ninetales
and was cursed, however, his/her Gardevoir took the curse upon herself to save her master.
However, the human selfishly deserts the cursed Gardevoir. Ninetales prophesises that the
selfish human would be reborn as a Pokémon, and when that happens, the
balance of nature in the world would collapse.
* Gengar convinces the Pokémon that the player is the selfish human in
the legend of Ninetales, and they decide to run them out of town.
* To escape their pursuers the team pass through Lapis Cave and then Mt. Blaze, where
they encounter Moltres.
* The team enters Frosty Forest and is attacked by Articuno, who blames the player for
bringing natural disasters to its forest. An Absol steps in and stops the fighting, then
joins the rescue team.
* The player reaches Mt Freeze and meets the Ninetales of the legend. The player
discovers that while part of the legend is true, and the selfish human from the legend is
alive, the player is not that human.
* The player returns to the town, and Gengar is discredited. Meanwhile Team A.C.T.
(named after their members, Alakazam, Charizard, and Tyranitar) goes to the Magma Caverns
to defeat Groudon.
* Wynaut and Wobbuffet ask the player to go defeat the Mankey gang in the Uproar
Forest. In return, they offer a peeled Chestnut, which are in turn used to convince the
Mankey gang to help renovate the Rescue Team Base.
* Team A.C.T. is instead defeated, and a new team, comprised of Blastoise, Octillery
and Golem, is formed to go rescue them.
* The new team is also defeated. The player goes to Magma Cavern themselves to rescue
Team A.C.T.
* After defeating Groudon, Xatu announces that a falling star is headed towards the
planet, and that it is the meteor that is causing the imbalance in nature.
* Gardevoir reveals to the player, in a dream, the true reason for his/her
transformation: the player was destined to be the savior of the Pokémon
world; the player decided to erase the memories of being a human in order to cleanse the
heart and mind.
* The player goes to find Rayquaza in order to convince it to destroy the falling
star.
* Rayquaza's Hyper Beam destroys the meteorite. However, the player ends up in the
netherworld in the aftermath of the explosion; Gengar somehow helps them return to the
Pokémon world.
* As the Pokémon celebrate the end of the calamities, the player says
farewell and leaves to return to the human world.
* After the credits roll, the player decides to remain in the Pokémon
world, and reappears at the rescue base.