#  After talking to Lombre and Whiscash, the player goes to Stormy Sea and defeats Kyogre.
# After getting mail about a new dungeon, the player talks to Lombre. Then Shiftry will
let the player go to Buried Relic.
# After completing several missions in the Solar Cave, Spinda walks into
Pokémon Square and collapses. The player and their partner take him back to
their rescue base.
# Spinda reveals he was looking for the mirage Pokémon, but doesn't know what
it is. He gives the player the Clear Wing, then leaves and stays in Pokémon
Square for a while.
# The player's partner suggests that they go and speak to Xatu.
# Upon reaching the top of the Great Canyon, Xatu reveals that the player must first go to
the three fields and face the Lords of those areas (the Legendary beasts).
# After clearing the Fiery Field and defeating Entei, Entei turns the Clear Wing into the
Red Wing.
# After clearing the Lightning Field and defeating Raikou, Raikou turns the Red Wing into
the Sunset Wing.
# After clearing the Northwind Field and defeating Suicune, Suicune turns the Sunset Wing
into the Rainbow Wing, and Mt. Faraway is unlocked.
# Once the player clears Mt. Faraway and defeat the Mirage Pokémon, revealed
to be Ho-Oh, the player can go back to the Fields and Mt. Faraway to recruit the Legendary
Beasts and Ho-Oh (If you have their friend areas).
# If the player go back to Pokémon Square and talk to Spinda, it will leave,
encouraged to go exploring again.
# Medicham and Ekans go to the Wish Cave to try to grant wishes for themselves.
# Ekans is defeated and places a rescue request for Medicham, who is still stuck in the
cave.
# After rescuing Medicham, the player is rewarded with the Wish Stone.
# Medicham and Ekans reveal that Gengar is trying to climb Mt. Freeze.
# Gengar asks the player to escort him up Mt. Freeze.
# Gengar reveals himself to be the selfish human in the legend of Ninetales, and is the
master of Gardevoir.
# Ninetales gives Gengar the Nine Tail Crest, and sends him to Murky Cave.
# The player and Gengar go rescue Gardevoir. Gardevoir then offers to join the players
rescue team, but it has lost all its memory relating to Gengar.
# Once the player goes back and recruits Ho-Oh, a cutscene will be shown showing Blastoise
and Charizard being KO'd by an incredibly strong Pokémon in an extremely
tough dungeon.
# When the player goes through the dungeon, the Pokémon is revealed as
Mewtwo.
# If the player has the friend area Cryptic Cave, Mewtwo will ask to join the player's
rescue team second time through the dungeon if the player defeats Mewtwo.
# After recruiting all of the legendary birds, the player talks to Alakazam. The player
then goes to Legendary Island and Articuno, Zapdos, and Moltres will grant access to
Silver Trench.
# After recruiting Lugia, Xatu will appear outside the Team base. After that, Blastoise
will come and say that he saw a cave and saw "weird things". Xatu will then name
the place Meteor Cave. Then, the player will gain access to it. The player may recruit
Deoxys in the Meteor Cave.